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1

Protein Phase Separation: A New Phase in Cell Biology

Boeynaems, Steven, Alberti, Simon, Fawzi, Nicolas L., Mittag, Tanja, Polymenidou, Magdalini, Rousseau, Frederic, Schymkowitz, Joost, Shorter, James, Wolozin, Benjamin, Van Den Bosch, Ludo, Tompa, Pete

Journal:

Trends in Cell Biology

Year:

2018

Language:

english

File:

PDF, 2.88 MB

english, 2018

2

Protein-Peptide Complex Prediction through Fragment Interaction Patterns

Verschueren, Erik, Vanhee, Peter, Rousseau, Frederic, Schymkowitz, Joost, Serrano, Luis

Journal:

Year:

2013

Language:

english

File:

PDF, 1.17 MB

english, 2013

3

Structural Diversity of PDZ–Lipid Interactions

Rodrigo Gallardo, Ylva Ivarsson, Joost Schymkowitz, Frédéric Rousseau, Pascale Zimmermann

Journal:

Year:

2010

Language:

english

File:

PDF, 746 KB

english, 2010

4

ChemInform Abstract: Structural Diversity of PDZ—Lipid Interactions

Rodrigo Gallardo, Ylva Ivarsson, Joost Schymkowitz, Frederic Rousseau, Pascale Zimmermann

Journal:

Year:

2010

File:

PDF, 15 KB

2010

5

Genetic variability in the mitochondrial serine protease HTRA2 contributes to risk for Parkinson disease

Veerle Bogaerts, Karen Nuytemans, Joke Reumers, Philippe Pals, Sebastiaan Engelborghs, Barbara Pickut, Ellen Corsmit, Karin Peeters, Joost Schymkowitz, Peter Paul De Deyn, Patrick Cras, Frederic Rouss

Journal:

Year:

2008

Language:

english

File:

PDF, 331 KB

english, 2008

6

Protein sequences encode safeguards against aggregation

Joke Reumers, Sebastian Maurer-Stroh, Joost Schymkowitz, Fréderic Rousseau

Journal:

Year:

2009

Language:

english

File:

PDF, 292 KB

english, 2009

7

Quantifying information transfer by protein domains: Analysis of the Fyn SH2 domain structure

Tom Lenaerts, Jesper Ferkinghoff-Borg, Francois Stricher, Luis Serrano, Joost WH Schymkowitz, Frederic Rousseau

Journal:

BMC Structural Biology

Year:

2008

Language:

english

File:

PDF, 2.54 MB

english, 2008

8

Prediction of sequence-dependent and mutational effects on the aggregation of peptides and proteins

Fernandez-Escamilla, Ana-Maria, Rousseau, Frederic, Schymkowitz, Joost, Serrano, Luis

Journal:

Nature Biotechnology

Year:

2004

Language:

english

File:

PDF, 236 KB

english, 2004

9

10.1038/nsb1001-888

Schymkowitz, Joost W.H., Rousseau, Frederic, Wilkinson, Hannah R., Friedler, Assaf, Itzhaki, Laura S.

Journal:

Natural Structural Biology

Year:

2001

Language:

english

File:

PDF, 703 KB

english, 2001

10

Hybrid N-glycans on the host protective activation-associated secreted proteins of Ostertagia ostertagi and their importance in immunogenicity

Yves Meyvis, Nico Callewaert, Kris Gevaert, Evy Timmerman, Joost Van Durme, Joost Schymkowitz, Frederic Rousseau, Jozef Vercruysse, Edwin Claerebout, Peter Geldhof

Journal:

Molecular and Biochemical Parasitology

Year:

2008

Language:

english

File:

PDF, 612 KB

english, 2008

11

Corrigendum to “Hybrid N-glycans on the host protective activation-associated secreted proteins of Ostertagia ostertagi and their importance in immunogenicity” [Mol. Biochem. Parasitol. 161 (1) (2008) 67–71]

Yves Meyvis, Nico Callewaert, Kris Gevaert, Evy Timmerman, Joost Van Durme, Joost Schymkowitz, Frederic Rousseau, Jozef Vercruyssea, Edwin Claerebouta, Peter Geldhofa

Journal:

Molecular and Biochemical Parasitology

Year:

2009

Language:

english

File:

PDF, 79 KB

english, 2009

12

A systems biology perspective on protein structural dynamics and signal transduction

Frederic Rousseau, Joost Schymkowitz

Journal:

Current Opinion in Structural Biology

Year:

2005

Language:

english

File:

PDF, 261 KB

english, 2005

13

Protein aggregation and amyloidosis: confusion of the kinds?

Frederic Rousseau, Joost Schymkowitz, Luis Serrano

Journal:

Current Opinion in Structural Biology

Year:

2006

Language:

english

File:

PDF, 717 KB

english, 2006

14

Protein design with fragment databases

Erik Verschueren, Peter Vanhee, Almer M van der Sloot, Luis Serrano, Frederic Rousseau, Joost Schymkowitz

Journal:

Current Opinion in Structural Biology

Year:

2011

Language:

english

File:

PDF, 803 KB

english, 2011

15

Protein-Peptide Interactions Adopt the Same Structural Motifs as Monomeric Protein Folds

Peter Vanhee, Francois Stricher, Lies Baeten, Erik Verschueren, Tom Lenaerts, Luis Serrano, Frederic Rousseau, Joost Schymkowitz

Journal:

Year:

2009

Language:

english

File:

PDF, 1001 KB

english, 2009

16

Computational design of peptide ligands

Peter Vanhee, Almer M. van der Sloot, Erik Verschueren, Luis Serrano, Frederic Rousseau, Joost Schymkowitz

Journal:

Trends in Biotechnology

Year:

2011

Language:

english

File:

PDF, 894 KB

english, 2011

17

The Structure of the Transition State for Folding of Domain-Swapped Dimeric p13suc1

Frederic Rousseau, Joost W.H. Schymkowitz, Hannah R. Wilkinson, Laura S. Itzhaki

Journal:

Year:

2002

Language:

english

File:

PDF, 203 KB

english, 2002

18

The Unfolding Story of Three-Dimensional Domain Swapping

Frederic Rousseau, Joost W.H. Schymkowitz, Laura S. Itzhaki

Journal:

Year:

2003

Language:

english

File:

PDF, 258 KB

english, 2003

19

Using structural bioinformatics to investigate the impact of non synonymous SNPs and disease mutations: scope and limitations

Joke Reumers, Joost Schymkowitz, Fréderic Rousseau

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 251 KB

english, 2009

20

Modeling protein-peptide interactions using protein fragments: fitting the pieces?

Peter Vanhee, Francois Stricher, Lies Baeten, Erik Verschueren, Luis Serrano, Frederic Rousseau, Joost Schymkowitz

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 385 KB

english, 2010

21

Information theoretical quantification of cooperativity in signalling complexes

Tom Lenaerts, Jesper Ferkinghoff-Borg, Joost Schymkowitz, Frederic Rousseau

Journal:

BMC Systems Biology

Year:

2009

Language:

english

File:

PDF, 3.62 MB

english, 2009

22

Brominated phenols as auxin-like molecules

Stijn Spaepen, Joost Van Durme, Frederik Das, Sebastian Maurer-Stroh, Frederic Rousseau, Joost Schymkowitz, Jos Vanderleyden

Journal:

European Journal of Soil Biology

Year:

2009

Language:

english

File:

PDF, 354 KB

english, 2009

23

A Comparative Study of the Relationship Between Protein Structure and β-Aggregation in Globular and Intrinsically Disordered Proteins

Rune Linding, Joost Schymkowitz, Frederic Rousseau, Francesca Diella, Luis Serrano

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 245 KB

english, 2004

24

Recognizing and Defining True Ras Binding Domains II: In Silico Prediction Based on Homology Modelling and Energy Calculations

Christina Kiel, Sabine Wohlgemuth, Frederic Rousseau, Joost Schymkowitz, Jesper Ferkinghoff-Borg, Fred Wittinghofer, Luis Serrano

Journal:

Journal of Molecular Biology

Year:

2005

Language:

english

File:

PDF, 778 KB

english, 2005

25

Antigen Binding and Solubility Effects upon the Veneering of a Camel VHH in Framework-2 to Mimic a VH

Katja Conrath, Cécile Vincke, Benoît Stijlemans, Joost Schymkowitz, Klaas Decanniere, Lode Wyns, Serge Muyldermans, Remy Loris

Journal:

Journal of Molecular Biology

Year:

2005

Language:

english

File:

PDF, 823 KB

english, 2005

26

How Evolutionary Pressure Against Protein Aggregation Shaped Chaperone Specificity

Frederic Rousseau, Luis Serrano, Joost W.H. Schymkowitz

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 340 KB

english, 2006

27

Domain Swapping in p13suc1 Results in Formation of Native-like, Cytotoxic Aggregates

Frederic Rousseau, Hannah Wilkinson, Josep Villanueva, Luis Serrano, Joost W.H. Schymkowitz, Laura S. Itzhaki

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 716 KB

english, 2006

28

The Stability Effects of Protein Mutations Appear to be Universally Distributed

Nobuhiko Tokuriki, Francois Stricher, Joost Schymkowitz, Luis Serrano, Dan S. Tawfik

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 1.11 MB

english, 2007

29

A comparative analysis of the aggregation behavior of amyloid-β peptide variants

Annelies Vandersteen, Ellen Hubin, Rabia Sarroukh, Greet De Baets, Joost Schymkowitz, Frederic Rousseau, Vinod Subramaniam, Vincent Raussens, Holger Wenschuh, Dirk Wildemann, Kerensa Broersen

Journal:

Year:

2012

Language:

english

File:

PDF, 1.04 MB

english, 2012

30

O2-02-04: Lipids revert inert amyloid fibrils to neurotoxic protofibrils that affect learning in mice

Inna Kuperstein, Ivo Martins, Hannah Wilkinson, Mieke Vanbrabant, Elke Maes, Rudi D'Hooge, Joost Schymkowitz, Frederic Rousseau, Bart De Strooper

Journal:

Alzheimer's & Dementia

Year:

2008

Language:

english

File:

PDF, 57 KB

english, 2008

31

MOTIF DISCOVERY WITH DATA MINING IN 3D PROTEIN STRUCTURE DATABASES: DISCOVERY, VALIDATION AND PREDICTION OF THE U-SHAPE ZINC BINDING ("HUF-ZINC") MOTIF

MAURER-STROH, SEBASTIAN, GAO, HE, HAN, HAO, BAETEN, LIES, SCHYMKOWITZ, JOOST, ROUSSEAU, FREDERIC, ZHANG, LOUXIN, EISENHABER, FRANK

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2013

Language:

english

File:

PDF, 770 KB

english, 2013

32

The culprit behind amyloid beta peptide related neurotoxicity in Alzheimer's disease: oligomer size or conformation?

Kerensa Broersen, Frederic Rousseau, Joost Schymkowitz

Journal:

Alzheimer's Research & Therapy

Year:

2010

Language:

english

File:

PDF, 412 KB

english, 2010

33

A Genome-Wide Sequence–Structure Analysis Suggests Aggregation Gatekeepers Constitute an Evolutionary Constrained Functional Class

De Baets, Greet, Van Durme, Joost, Rousseau, Frederic, Schymkowitz, Joost

Journal:

Journal of Molecular Biology

Year:

2014

Language:

english

File:

PDF, 529 KB

english, 2014

34

Horizontal gene transfer from human host to HIV-1 reverse transcriptase confers drug resistance and partly compensates for replication deficits

Megens, Sarah, Vaira, Dolores, De Baets, Greet, Dekeersmaeker, Nathalie, Schrooten, Yoeri, Li, Guangdi, Schymkowitz, Joost, Rousseau, Frederic, Vandamme, Anne-Mieke, Moutschen, Michel, Van Laethem, Kr

Journal:

Year:

2014

Language:

english

File:

PDF, 1.44 MB

english, 2014

35

Amyloid Beta-peptide Length Strongly Affects Aggregation Kinetics

Vandersteen, Annelies, Broersen, Kerensa, Schymkowitz, Joost, Rousseau, Frederic

Journal:

Alzheimer's & Dementia

Year:

2009

Language:

english

File:

PDF, 67 KB

english, 2009

36

Folding and Association of the Human Cell Cycle Regulatory Proteins ckshs1 and ckshs2 †

Seeliger, Markus A., Schymkowitz, Joost W. H., Rousseau, Frederic, Wilkinson, Hannah R., Itzhaki, Laura S.

Journal:

Year:

2002

Language:

english

File:

PDF, 345 KB

english, 2002

37

Selectivity of Aggregation-Determining Interactions

Ganesan, Ashok, Debulpaep, Maja, Wilkinson, Hannah, Van Durme, Joost, De Baets, Greet, Jonckheere, Wim, Ramakers, Meine, Ivarsson, Ylva, Zimmermann, Pascale, Van Eldere, Johan, Schymkowitz, Joost, Rou

Journal:

Journal of Molecular Biology

Year:

2015

Language:

english

File:

PDF, 869 KB

english, 2015

38

Sequence-dependent Internalization of Aggregating Peptides

Couceiro, José R., Gallardo, Rodrigo, De Smet, Frederik, De Baets, Greet, Baatsen, Pieter, Annaert, Wim, Roose, Kenny, Saelens, Xavier, Schymkowitz, Joost, Rousseau, Frederic

Journal:

Journal of Biological Chemistry

Year:

2015

Language:

english

File:

PDF, 5.42 MB

english, 2015

39

Structure of the Extracellular Domain of Matrix Protein 2 of Influenza A Virus in Complex with a Protective Monoclonal Antibody

Cho, Ki Joon, Schepens, Bert, Seok, Jong Hyeon, Kim, Sella, Roose, Kenny, Lee, Ji-Hye, Gallardo, Rodrigo, Van Hamme, Evelien, Schymkowitz, Joost, Rousseau, Frederic, Fiers, Walter, Saelens, Xavier, Ki

Journal:

Journal of Virology

Year:

2015

Language:

english

File:

PDF, 2.14 MB

english, 2015

40

Solubis: optimize your protein: Fig. 1.

De Baets, Greet, Van Durme, Joost, van der Kant, Rob, Schymkowitz, Joost, Rousseau, Frederic

Journal:

Year:

2015

Language:

english

File:

PDF, 184 KB

english, 2015

41

Structural Basis for Increased Toxicity of Pathological Aβ 42 :Aβ 40 Ratios in Alzheimer Disease

Pauwels, Kris, Williams, Thomas L., Morris, Kyle L., Jonckheere, Wim, Vandersteen, Annelies, Kelly, Geoff, Schymkowitz, Joost, Rousseau, Frederic, Pastore, Annalisa, Serpell, Louise C., Broersen, Kere

Journal:

Journal of Biological Chemistry

Year:

2012

Language:

english

File:

PDF, 2.82 MB

english, 2012

42

PrionW: a server to identify proteins containing glutamine/asparagine rich prion-like domains and their amyloid cores

Zambrano, Rafael, Conchillo-Sole, Oscar, Iglesias, Valentin, Illa, Ricard, Rousseau, Frederic, Schymkowitz, Joost, Sabate, Raimon, Daura, Xavier, Ventura, Salvador

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.84 MB

english, 2015

43

Exploring the sequence–structure relationship for amyloid peptides

Morris, Kyle L., Rodger, Alison, Hicks, Matthew R., Debulpaep, Maya, Schymkowitz, Joost, Rousseau, Frederic, Serpell, Louise C.

Journal:

Biochemical Journal

Year:

2013

Language:

english

File:

PDF, 1.77 MB

english, 2013

44

Amyloids or prions? That is the question

Sabate, Raimon, Rousseau, Frederic, Schymkowitz, Joost, Batlle, Cristina, Ventura, Salvador

Journal:

Year:

2015

Language:

english

File:

PDF, 571 KB

english, 2015

45

Reconstruction of Protein Backbones from the BriX Collection of Canonical Protein Fragments

Baeten, Lies, Reumers, Joke, Tur, Vicente, Stricher, François, Lenaerts, Tom, Serrano, Luis, Rousseau, Frederic, Schymkowitz, Joost, Dunbrack, Roland

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 539 KB

english, 2008

46

Genome-Wide Prediction of SH2 Domain Targets Using Structural Information and the FoldX Algorithm

Sánchez, Ignacio E., Beltrao, Pedro, Stricher, Francois, Schymkowitz, Joost, Ferkinghoff-Borg, Jesper, Rousseau, Frederic, Serrano, Luis, Rost, Burkhard

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 424 KB

english, 2008

47

Accurate Prediction of DnaK-Peptide Binding via Homology Modelling and Experimental Data

Van Durme, Joost, Maurer-Stroh, Sebastian, Gallardo, Rodrigo, Wilkinson, Hannah, Rousseau, Frederic, Schymkowitz, Joost, Tramontano, Anna

Journal:

PLoS Computational Biology

Year:

2009

Language:

english

File:

PDF, 604 KB

english, 2009

48

An Evolutionary Trade-Off between Protein Turnover Rate and Protein Aggregation Favors a Higher Aggregation Propensity in Fast Degrading Proteins

De Baets, Greet, Reumers, Joke, Delgado Blanco, Javier, Dopazo, Joaquin, Schymkowitz, Joost, Rousseau, Frederic, Sanchez-Ruiz, Jose M.

Journal:

PLoS Computational Biology

Year:

2011

Language:

english

File:

PDF, 503 KB

english, 2011

49

What Makes a Protein Sequence a Prion?

Sabate, Raimon, Rousseau, Frederic, Schymkowitz, Joost, Ventura, Salvador, Fetrow, Jacquelyn S.

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 594 KB

english, 2015

50

Variable Glutamine-Rich Repeats Modulate Transcription Factor Activity

Gemayel, Rita, Chavali, Sreenivas, Pougach, Ksenia, Legendre, Matthieu, Zhu, Bo, Boeynaems, Steven, van der Zande, Elisa, Gevaert, Kris, Rousseau, Frederic, Schymkowitz, Joost, Babu, M. Madan, Verstre

Journal:

Year:

2015

Language:

english

File:

PDF, 4.43 MB

english, 2015

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